Jobsub ID 271933.1@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 271933.1@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 3652 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-10-08 23:49:55 |
| Site | UK_Manchester |
| Entry | UBoone_T2_UK_Manchester_ce01 |
| Last heartbeat | 2024-10-09 04:34:08 |
| From worker node | Hostname | wn1206091.tier2.hep.manchester.ac.uk |
| cpuinfo | AMD EPYC 7702P 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 257400 (71 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-08 23:51:45 |
| Input files | usertests:000135_reco_data_2024-10-07T_114846Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-09 04:34:08 |
| Saved logs | justin-logs:271933.1-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/fa/2f/000135_reco_data_2024-10-07T_114846Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1280 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 09-Oct-2024 01:23:39 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'largeant': 445097953
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 09-Oct-2024 01:23:39 BST run: 20000031 subRun: 0 event: 606 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 09-Oct-2024 01:26:57 BST run: 20000031 subRun: 0 event: 606
Not Stored Process summary:
compt : 2130912
Pair : 46
annihil : 102810
phot : 688406
Brem : 632712
conv : 102764
Ion : 272450
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 09-Oct-2024 01:26:57 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 09-Oct-2024 01:26:57 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 09-Oct-2024 01:26:57 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 09-Oct-2024 01:26:57 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 255580107
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 09-Oct-2024 01:27:16 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'elecDrift': 871989058
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 09-Oct-2024 01:29:29 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'PDFastSim.photon': 67775451
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 09-Oct-2024 01:29:29 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'PDFastSim.scinttime': 386506785
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
09-Oct-2024 05:33:08 BST Closed input file "root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/fa/2f/000135_reco_data_2024-10-07T_114846Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.0142899 27.4384 14884.3 0.435298 604.076 606
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 0.000119977 0.000403515 0.0152212 0.000171759 0.00136247 606
simulate:rns:RandomNumberSaver 2.1701e-05 3.76157e-05 0.000371371 3.42745e-05 1.65814e-05 606
simulate:largeant:larg4Main 0.0130013 1.09223 198.776 0.416204 8.21274 606
simulate:IonAndScint:IonAndScint 0.000130476 0.0330499 18.7944 0.00018769 0.76279 606
simulate:elecDrift:SimDriftElectrons 4.6237e-05 0.240039 133.287 7.3639e-05 5.40967 606
simulate:PDFastSim:PDFastSimPAR 6.4262e-05 26.0689 14533.4 0.000102363 589.865 606
simulate:muonfilter:LArG4ParticleFilter 1.6361e-05 7.10876e-05 0.00704935 2.76525e-05 0.000318824 606
[art]:TriggerResults:TriggerResultInserter 1.0951e-05 1.75753e-05 6.1537e-05 1.6471e-05 5.39728e-06 606
end_path:out1:RootOutput 8.426e-06 1.26638e-05 0.000405966 1.1642e-05 1.62486e-05 606
end_path:out1:RootOutput(write) 3.617e-06 0.00282299 1.06334 6.011e-06 0.0470349 605
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 09-Oct-2024 05:33:08 BST ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 255580107 IonAndScint.ISCalcAlg
(per event) 67775451 PDFastSim.photon
(per event) 386506785 PDFastSim.scinttime
(per event) 871989058 elecDrift
(per event) 445097953 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 17554.2 MB
Peak resident set size usage (VmHWM): 14611.9 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 606 passed = 4 failed = 602
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 4 4 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 16188.288088 Real = 16738.635485
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 17554.2 VmHWM = 14611.9
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 90588
-rw-r--r-- 1 dune01 dune01 90529758 Oct 9 05:33 RootOutput-9402-411a-a0ae-66c2.root
-rw-r--r-- 1 dune01 dune01 2206234 Oct 9 05:33 000135_reco_data_2024-10-07T_114846Z_reco_2024-10-08T_235152Z.log
-rw-r--r-- 1 dune01 dune01 7875 Oct 9 05:33 jobscript.log
-rw-r--r-- 1 dune01 dune01 274 Oct 9 00:52 TFileService-1196-965b-7723-8b44.root
-rw-r--r-- 1 dune01 dune01 104 Oct 9 00:51 all-input-dids.txt
-rw-r--r-- 1 dune01 dune01 0 Oct 9 05:33 000135_reco_data_2024-10-07T_114846Z_reco_data_2024-10-08T_235152Z.root.ext.json
-rw-r--r-- 1 dune01 dune01 0 Oct 9 05:33 000135_reco_data_2024-10-07T_114846Z_reco_data_2024-10-08T_235152Z.root.json 