Jobsub ID 271911.0@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 271911.0@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 3652 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-10-08 22:30:39 |
| Site | UK_Durham |
| Entry | DUNE_UK_SGridDurham_ce4 |
| Last heartbeat | 2024-10-09 02:07:48 |
| From worker node | Hostname | n260.dur.scotgrid.ac.uk |
| cpuinfo | AMD EPYC 7763 64-Core Processor |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 171000 (47 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-08 22:31:49 |
| Input files | usertests:000504_reco_data_2024-10-07T_115700Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-09 02:07:48 |
| Saved logs | justin-logs:271911.0-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/f5/62/000504_reco_data_2024-10-07T_115700Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1280 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 08-Oct-2024 23:54:08 BST run: 20000031 subRun: 0 event: 484
Random seed for this event, engine 'largeant': 477794550
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 08-Oct-2024 23:54:08 BST run: 20000031 subRun: 0 event: 484 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 08-Oct-2024 23:56:49 BST run: 20000031 subRun: 0 event: 484
Not Stored Process summary:
Pair : 84
annihil : 128682
phot : 862683
compt : 2673158
Brem : 791818
conv : 128594
Ion : 340549
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 23:56:50 BST run: 20000031 subRun: 0 event: 484 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 23:56:50 BST run: 20000031 subRun: 0 event: 484 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 23:56:50 BST run: 20000031 subRun: 0 event: 484 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 08-Oct-2024 23:56:50 BST run: 20000031 subRun: 0 event: 484
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 468178113
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 08-Oct-2024 23:57:04 BST run: 20000031 subRun: 0 event: 484
Random seed for this event, engine 'elecDrift': 432354835
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 09-Oct-2024 00:01:07 BST run: 20000031 subRun: 0 event: 484
Random seed for this event, engine 'PDFastSim.photon': 802146248
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 09-Oct-2024 00:01:07 BST run: 20000031 subRun: 0 event: 484
Random seed for this event, engine 'PDFastSim.scinttime': 97818153
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
09-Oct-2024 03:06:02 BST Closed input file "root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/f5/62/000504_reco_data_2024-10-07T_115700Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.00714113 26.1183 11421.5 0.302109 518.561 484
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 0.000119597 0.000770018 0.135141 0.000156521 0.00651331 484
simulate:rns:RandomNumberSaver 2.4025e-05 3.5457e-05 0.000441504 3.0613e-05 2.10565e-05 484
simulate:largeant:larg4Main 0.00618425 0.7934 161.698 0.278033 7.35552 484
simulate:IonAndScint:IonAndScint 0.000126519 0.0319047 14.4906 0.000173498 0.657923 484
simulate:elecDrift:SimDriftElectrons 4.5375e-05 0.521137 242.058 6.0234e-05 10.9907 484
simulate:PDFastSim:PDFastSimPAR 6.0064e-05 24.7646 11003.2 7.2036e-05 499.59 484
simulate:muonfilter:LArG4ParticleFilter 1.7763e-05 8.41144e-05 0.0069903 2.4511e-05 0.000368187 484
[art]:TriggerResults:TriggerResultInserter 1.1212e-05 1.50678e-05 0.000343789 1.324e-05 1.5545e-05 484
end_path:out1:RootOutput 9.388e-06 1.55277e-05 0.00119841 1.12665e-05 5.61217e-05 484
end_path:out1:RootOutput(write) 3.406e-06 0.00568611 1.13773 4.509e-06 0.0721016 483
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 09-Oct-2024 03:06:02 BST ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 468178113 IonAndScint.ISCalcAlg
(per event) 802146248 PDFastSim.photon
(per event) 97818153 PDFastSim.scinttime
(per event) 432354835 elecDrift
(per event) 477794550 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 26375.3 MB
Peak resident set size usage (VmHWM): 14289 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 484 passed = 7 failed = 477
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 7 7 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 12512.287618 Real = 12752.066445
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 26375.3 VmHWM = 14289
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 180984
-rw-r--r--. 1 dune001 dune 183524656 Oct 9 03:06 RootOutput-c135-093c-38fc-bb01.root
-rw-r--r--. 1 dune001 dune 1775232 Oct 9 03:06 000504_reco_data_2024-10-07T_115700Z_reco_2024-10-08T_223159Z.log
-rw-r--r--. 1 dune001 dune 7871 Oct 9 03:07 jobscript.log
-rw-r--r--. 1 dune001 dune 274 Oct 8 23:32 TFileService-0a36-e303-005b-e3b9.root
-rw-r--r--. 1 dune001 dune 104 Oct 8 23:31 all-input-dids.txt
-rw-r--r--. 1 dune001 dune 0 Oct 9 03:06 000504_reco_data_2024-10-07T_115700Z_reco_data_2024-10-08T_223159Z.root.ext.json
-rw-r--r--. 1 dune001 dune 0 Oct 9 03:07 000504_reco_data_2024-10-07T_115700Z_reco_data_2024-10-08T_223159Z.root.json 