Jobsub ID 271787.1@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 271787.1@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 3652 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-10-08 17:28:38 |
| Site | UK_Lancaster |
| Entry | UBoone_UK_Lancaster_HEC_grendel_ce02 |
| Last heartbeat | 2024-10-08 20:53:38 |
| From worker node | Hostname | comp14-25 |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 257400 (71 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-10-08 17:30:49 |
| Input files | usertests:000135_reco_data_2024-10-07T_114846Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-10-08 20:53:38 |
| Saved logs | justin-logs:271787.1-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/fa/2f/000135_reco_data_2024-10-07T_114846Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1282 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 08-Oct-2024 18:56:19 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'largeant': 445097953
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 08-Oct-2024 18:56:19 BST run: 20000031 subRun: 0 event: 606 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 08-Oct-2024 18:59:48 BST run: 20000031 subRun: 0 event: 606
Not Stored Process summary:
compt : 2130912
Pair : 46
annihil : 102810
phot : 688406
Brem : 632712
conv : 102764
Ion : 272450
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 18:59:48 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 18:59:48 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 08-Oct-2024 18:59:48 BST run: 20000031 subRun: 0 event: 606 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 08-Oct-2024 18:59:49 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 255580107
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 08-Oct-2024 19:00:00 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'elecDrift': 871989058
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 08-Oct-2024 19:01:25 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'PDFastSim.photon': 67775451
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 08-Oct-2024 19:01:25 BST run: 20000031 subRun: 0 event: 606
Random seed for this event, engine 'PDFastSim.scinttime': 386506785
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
08-Oct-2024 21:52:53 BST Closed input file "root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/usertests/fa/2f/000135_reco_data_2024-10-07T_114846Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.0125711 19.6288 10504.3 0.465486 426.306 606
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 0.000110167 0.000359241 0.0127877 0.000129523 0.00140799 606
simulate:rns:RandomNumberSaver 2.248e-05 2.9423e-05 0.000212182 2.59425e-05 1.05403e-05 606
simulate:largeant:larg4Main 0.0115653 1.14893 209.729 0.431061 8.66355 606
simulate:IonAndScint:IonAndScint 0.000115708 0.0200317 11.3367 0.000132055 0.460109 606
simulate:elecDrift:SimDriftElectrons 5.5122e-05 0.15244 84.6163 6.45085e-05 3.43428 606
simulate:PDFastSim:PDFastSimPAR 7.3219e-05 18.3046 10198.6 9.54985e-05 413.928 606
simulate:muonfilter:LArG4ParticleFilter 1.806e-05 4.94031e-05 0.00385199 2.2144e-05 0.000177018 606
[art]:TriggerResults:TriggerResultInserter 1.395e-05 1.58548e-05 4.5229e-05 1.5104e-05 2.48646e-06 606
end_path:out1:RootOutput 9.829e-06 1.1723e-05 0.000232012 1.0729e-05 9.16366e-06 606
end_path:out1:RootOutput(write) 6.076e-06 0.00177924 0.663384 6.617e-06 0.0293953 605
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 08-Oct-2024 21:52:53 BST ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 255580107 IonAndScint.ISCalcAlg
(per event) 67775451 PDFastSim.photon
(per event) 386506785 PDFastSim.scinttime
(per event) 871989058 elecDrift
(per event) 445097953 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 17557.2 MB
Peak resident set size usage (VmHWM): 14876.5 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 606 passed = 4 failed = 602
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 4 4 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 11880.337826 Real = 12005.333945
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 17557.2 VmHWM = 14876.5
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 90580
-rw-r--r-- 1 pltdune002 pltdune 90529758 Oct 8 21:52 RootOutput-11e7-8b46-5a2d-5f70.root
-rw-r--r-- 1 pltdune002 pltdune 2206234 Oct 8 21:52 000135_reco_data_2024-10-07T_114846Z_reco_2024-10-08T_173055Z.log
-rw-r--r-- 1 pltdune002 pltdune 7875 Oct 8 21:53 jobscript.log
-rw-r--r-- 1 pltdune002 pltdune 274 Oct 8 18:31 TFileService-b17e-69eb-7931-ae3d.root
-rw-r--r-- 1 pltdune002 pltdune 104 Oct 8 18:30 all-input-dids.txt
-rw-r--r-- 1 pltdune002 pltdune 0 Oct 8 21:53 000135_reco_data_2024-10-07T_114846Z_reco_data_2024-10-08T_173055Z.root.ext.json
-rw-r--r-- 1 pltdune002 pltdune 0 Oct 8 21:53 000135_reco_data_2024-10-07T_114846Z_reco_data_2024-10-08T_173055Z.root.json 