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Jobsub ID 262158.0@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID262158.0@justin-prod-sched01.dune.hep.ac.uk
Workflow TestingYes
Workflow ID1
Stage ID1
User nameamcnab@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
RSS bytes1073741824 (1024 MiB)
Wall seconds limit3600 (1 hours)
Submitted time2024-09-25 13:13:42
SiteNL_SURFsara
EntryDUNE_SurfSARA_arc03
Last heartbeat2024-09-25 13:47:14
From worker nodeHostnamewn-da-17.gina.surfsara.nl
cpuinfoAMD EPYC 7702P 64-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes1073741824 (1024 MiB)
Wall seconds limit129600 (36 hours)
Inner Apptainer?True
Job statefinished
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-09-25 13:20:34
Input files
JobscriptExit code0
Real time26m (1587s)
CPU time0m (17s = 1%)
Outputting started2024-09-25 13:47:02
Output files
Finished2024-09-25 13:47:14
Saved logsjustin-logs:262158.0-justin-prod-sched01.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

ache.region.CacheRegion._LockWrapper object at 0x2b3ec2c0c8e0> acquired
DEBUG:dogpile.cache.region:No value present for key: "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Calling creation function for not-yet-present value
DEBUG:dogpile.cache.region:Cache value generated in 0.000 seconds for key(s): "host_to_choose_choice['https://dune-rucio.fnal.gov']"
DEBUG:dogpile.lock:Released creation lock
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/?expression=SURFSARA HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA HTTP/1.1" 200 1260
DEBUG:root:Input validation done.
INFO:root:Preparing upload for file awt-1727270448-NOLSJtopOj
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /rses/SURFSARA/attr/ HTTP/1.1" 200 308
DEBUG:root:wan domain is used for the upload
DEBUG:root:Registering file
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /accounts/dunepro/scopes/ HTTP/1.1" 200 737
DEBUG:root:Trying to create dataset: testpro:awt-uploads-202439
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202439 HTTP/1.1" 409 104
INFO:root:Dataset testpro:awt-uploads-202439 already exists - no rule will be created
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-1727270448-NOLSJtopOj/meta?plugin=DID_COLUMN HTTP/1.1" 404 129
DEBUG:root:File DID does not exist
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /replicas HTTP/1.1" 201 7
INFO:root:Successfully added replica in Rucio catalogue at SURFSARA
DEBUG:root:gfal.Default: connecting to storage
DEBUG:root:gfal.Default: checking if file exists None
DEBUG:root:Checking if root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj exists
DEBUG:root:gfal.Default: checking if file exists root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:[{'hostname': 'webdav.grid.surfsara.nl', 'scheme': 'davs', 'port': 2880, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 2, 'write': 1, 'delete': 1}, 'wan': {'read': 2, 'write': 1, 'delete': 1, 'third_party_copy_read': 1, 'third_party_copy_write': 1}}, 'extended_attributes': None}, {'hostname': 'penguin12.grid.surfsara.nl', 'scheme': 'root', 'port': 21094, 'prefix': '/pnfs/grid.sara.nl/data/dune/disk/RSE', 'impl': 'rucio.rse.protocols.gfal.Default', 'domains': {'lan': {'read': 1, 'write': 1, 'delete': 2}, 'wan': {'read': 1, 'write': 1, 'delete': 2, 'third_party_copy_read': 10, 'third_party_copy_write': 10}}, 'extended_attributes': None}]
INFO:root:Trying upload with root to SURFSARA
DEBUG:root:Processing upload with the domain: wan
DEBUG:root:gfal.Default: connecting to storage
DEBUG:root:The PFN created from the LFN: root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj
DEBUG:root:gfal.Default: checking if file exists root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj
DEBUG:root:gfal.Default: checking if file exists root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload
DEBUG:root:put: Attempt 1
DEBUG:root:gfal.Default: uploading file from awt-1727270448-NOLSJtopOj to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload
INFO:root:Successful upload of temporary file. root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload
DEBUG:root:skip_upload_stat=False
DEBUG:root:stat: pfn=root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload
DEBUG:root:gfal.Default: getting stats of file root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload
DEBUG:root:Filesize: Expected=26 Found=26
DEBUG:root:Checksum: Expected=605f074d Found=605f074d
DEBUG:root:Renaming file root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj
DEBUG:root:gfal.Default: renaming file from root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj.rucio.upload to root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/da/04/awt-1727270448-NOLSJtopOj
DEBUG:root:gfal.Default: closing protocol connection
DEBUG:root:Upload done.
INFO:root:Successfully uploaded file awt-1727270448-NOLSJtopOj
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
/cvmfs/dune.opensciencegrid.org/products/dune/rucio/v34_4_2/NULL/lib/python3.9/site-packages/urllib3/connectionpool.py:1061: InsecureRequestWarning: Unverified HTTPS request is being made to host 'dune-rucio.fnal.gov'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html#ssl-warnings
  warnings.warn(
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /traces/ HTTP/1.1" 404 207
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "PUT /replicas HTTP/1.1" 200 0
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /dids/testpro/awt-uploads-202439/dids HTTP/1.1" 201 7
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "POST /replicas/list HTTP/1.1" 200 None
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): dune-rucio.fnal.gov:443
DEBUG:urllib3.connectionpool:https://dune-rucio.fnal.gov:443 "GET /dids/testpro/awt-uploads-202439/files HTTP/1.1" 200 None
--- Upload try 1/1
--- Rucio upload 1/1 returns 0
--- Replica check try 1/1
--- Dataset awt-uploads-202439 check try 1/1
--- Upload, replicas, and datasets checks passed
'justin-rucio-upload --rse SURFSARA --protocol davs --scope testpro --dataset awt-uploads-202439 awt-1727270448-NOLSJtopOj --timeout 1200' returns 0


subject   : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=2021060471/CN=172727043460
issuer    : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=2021060471
identity  : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk/CN=2021060471
type      : RFC compliant proxy
strength  : 2048 bits
path      : /home/awt-proxy.pem
timeleft  : 167:33:33
key usage : Digital Signature, Key Encipherment, Key Agreement
=== VO dune extension information ===
VO        : dune
subject   : /C=UK/O=eScience/OU=Manchester/L=HEP/CN=justin-jobs-production.dune.hep.ac.uk
issuer    : /DC=org/DC=incommon/C=US/ST=Illinois/O=Fermi Research Alliance/CN=voms1.fnal.gov
attribute : /dune/Role=Production/Capability=NULL
attribute : /dune/Role=NULL/Capability=NULL
timeleft  : 157:50:02
uri       : voms1.fnal.gov:15042

===== Results =====

Download/upload commands:
xrdcp --force --nopbar --verbose $read_pfn downloaded.txt
justin-rucio-upload --rse $rse_name --protocol $write_protocol --scope testpro --dataset  --timeout 1200 FILENAME
Use the wrapper job link on the page for the job on the justIN Dashboard to find the full log file, with errors from these commands

Each line: $JUSTIN_SITE_NAME $rse_name $download_retval $upload_retval $read_pfn $write_protocol
==awt== NL_SURFsara DUNE_CERN_EOS 0 0 root://eospublic.cern.ch:1094//eos/experiment/neutplatform/protodune/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_ES_PIC 0 0 root://xrootd.pic.es:1094/pnfs/pic.es/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_FR_CCIN2P3_DISK 0 0 root://ccxrootdegee.in2p3.fr:1094/pnfs/in2p3.fr/data/dune/disk/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_UK_LANCASTER_CEPH 0 0 root://xgate.hec.lancs.ac.uk:1094//cephfs/grid/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_US_BNL_SDCC 0 99 root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara DUNE_US_FNAL_DISK_STAGE 0 0 root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara MANCHESTER 54 99 root://bohr3226.tier2.hep.manchester.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara NIKHEF 0 0 root://dune.dcache.nikhef.nl:1094/pnfs/nikhef.nl/data/dune/generic/rucio/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara PRAGUE 0 0 root://golias100.farm.particle.cz:1094/dpm/farm.particle.cz/home/dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara QMUL 51 99 root://xrootd01.esc.qmul.ac.uk:1094//dune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara RAL-PP 0 0 root://mover.pp.rl.ac.uk:1094/pnfs/pp.rl.ac.uk/data/dune/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara RAL_ECHO 0 0 root://xrootd.echo.stfc.ac.uk:1094/dune:/protodune/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
==awt== NL_SURFsara SURFSARA 0 0 root://penguin12.grid.surfsara.nl:21094/pnfs/grid.sara.nl/data/dune/disk/RSE/testpro/bb/7f/awt-download-2023-03-07-01.txt davs
justIN time: 2024-11-17 05:15:39 UTC       justIN version: 01.01.09