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Jobsub ID 261828.84@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID261828.84@justin-prod-sched01.dune.hep.ac.uk
Workflow ID3386
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune.prod_mcsim
RequestedProcessors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit18000 (5 hours)
Submitted time2024-09-25 03:27:41
SiteUK_Liverpool
EntryDUNE_UK_Liverpool_hepgrid5
Last heartbeat2024-09-25 05:23:53
From worker nodeHostnamer12-n05.ph.liv.ac.uk
cpuinfoAMD EPYC 7453 28-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4193255424 (3999 MiB)
Wall seconds limit259200 (72 hours)
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-09-25 04:10:17
Input fileshd-protodune:np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210.hdf5
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Outputting started 
Output files
Finished2024-09-25 05:23:53
Saved logsjustin-logs:261828.84-justin-prod-sched01.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

.0568941      0.22568      0.0291885     0.0530729       30     
end_path:calibanagnocchi:CalibAnaTree                  0.138299       0.44778       1.56632      0.379977      0.249094        30     
end_path:out1:RootOutput(write)                        0.272137      0.552583      0.901877      0.557098      0.110154        30     
========================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 4951.27 MB
  Peak resident set size usage (VmHWM): 2362.72 MB
  Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
Output files:
\tReco: np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210_reco_stage1_reco_stage2_20240925T052048_keepup.root
\tHists: np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210_reco_stage1_reco_stage2_20240925T052048_keepup_hists.root
Forming reco metadata
Successfully opened file np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210_reco_stage1_reco_stage2_20240925T052048_keepup.root
Ran successfully
{
  "name": "np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210_reco_stage1_reco_stage2_20240925T052048_keepup.root",
  "namespace": "hd-protodune-det-reco",
  "metadata": {
    "core.file_format": "artroot",
    "core.application.name": "reco",
    "core.application.family": "dunesw",
    "core.application.version": "v09_91_02d01",
    "core.data_tier": "full-reconstructed",
    "dune.config_file": "standard_reco_stage2_calibration_protodunehd_keepup.fcl",
    "dune.campaign": "hd-protodune-reco-keepup-v0",
    "core.start_time": 1727239369.0,
    "core.end_time": 1727241648.0,
    "core.events": [
      338882,
      338890,
      338898,
      338906,
      338914,
      338922,
      338930,
      338938,
      338946,
      338954,
      338962,
      338970,
      338978,
      338986,
      338994,
      339002,
      339010,
      339018,
      339026,
      339034,
      339042,
      339050,
      339058,
      339066,
      339074,
      339082,
      339090,
      339098,
      339106,
      339114
    ],
    "core.event_count": 30,
    "core.first_event_number": 338882,
    "core.last_event_number": 339114,
    "core.data_stream": "physics",
    "core.file_content_status": "good",
    "core.file_type": "detector",
    "core.run_type": "hd-protodune",
    "core.runs": [
      29006
    ],
    "core.runs_subruns": [
      2900600001
    ],
    "dune.daq_test": false,
    "retention.status": "active",
    "retention.class": "physics",
    "origin.applications.config_files": {
      "reco1": "standard_reco_stage1_protodunehd_keepup.fcl"
    },
    "origin.applications.versions": {
      "reco1": "v09_91_02d01"
    },
    "origin.applications.names": [
      "reco1"
    ]
  },
  "parents": [
    {
      "did": "hd-protodune:np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210.hdf5"
    }
  ]
}Forming hist metadata
Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 169, in _new_conn
    conn = connection.create_connection(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 96, in create_connection
    raise err
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/connection.py", line 86, in create_connection
    sock.connect(sa)
TimeoutError: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 699, in urlopen
    httplib_response = self._make_request(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 382, in _make_request
    self._validate_conn(conn)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 1010, in _validate_conn
    conn.connect()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 353, in connect
    conn = self._new_conn()
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connection.py", line 181, in _new_conn
    raise NewConnectionError(
urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x2ab3eb8d9c40>: Failed to establish a new connection: [Errno 110] Connection timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 439, in send
    resp = conn.urlopen(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/connectionpool.py", line 755, in urlopen
    retries = retries.increment(
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/urllib3/util/retry.py", line 574, in increment
    raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210.hdf5&namespace=hd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x2ab3eb8d9c40>: Failed to establish a new connection: [Errno 110] Connection timed out'))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 197, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/cvmfs/larsoft.opensciencegrid.org/products/python/v3_9_15/Linux64bit+3.10-2.17/lib/python3.9/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631/meta_maker.py", line 48, in <module>
    results = inherit_metadata.inherit(args.parent)
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631/inherit_metadata.py", line 72, in inherit
    'metadata':get_parent_md(parent_name),
  File "/cvmfs/fifeuser2.opensciencegrid.org/sw/dune/71f643ddd59465043e3cd3712a1e24b9cd0fa631/inherit_metadata.py", line 27, in get_parent_md
    parent_file = mc.get_file(did=parent_name, with_metadata=True,
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 1234, in get_file
    return self.get_json(url)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 206, in get_json
    return self.unpack_json_data(self.send_request("get", uri_suffix, headers=headers, stream=True))
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 154, in send_request
    self.LastResponse = response = self.retry_request(method, url, headers=headers, **args)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/metacat/v3_42_2/NULL/lib/python3.9/site-packages/metacat/webapi/webapi.py", line 131, in retry_request
    response = requests.get(url, timeout=self.Timeout, **args)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 75, in get
    return request('get', url, params=params, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/api.py", line 61, in request
    return session.request(method=method, url=url, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 542, in request
    resp = self.send(prep, **send_kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/sessions.py", line 655, in send
    r = adapter.send(request, **kwargs)
  File "/cvmfs/fermilab.opensciencegrid.org/products/common/prd/python_future_six_request/v1_3_1/Linux64bit-3-10-2-17-python3-9/requests/adapters.py", line 516, in send
    raise ConnectionError(e, request=request)
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='metacat.fnal.gov', port=9443): Max retries exceeded with url: /dune_meta_prod/app/data/file?with_metadata=yes&with_provenance=no&with_datasets=no&name=np04hd_raw_run029006_1412_dataflow2_datawriter_0_20240831T085210.hdf5&namespace=hd-protodune (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x2ab3eb8d9c40>: Failed to establish a new connection: [Errno 110] Connection timed out'))
Error in hist metadata
justIN time: 2024-11-17 03:14:11 UTC       justIN version: 01.01.09