Jobsub ID 244936.1@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 244936.1@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 2869 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-08-19 14:04:23 |
| Site | CA_SFU |
| Entry | DUNE_CA_SFU_lcg-ce3 |
| Last heartbeat | 2024-08-19 17:18:40 |
| From worker node | Hostname | cdr193.int.cedar.computecanada.ca |
| cpuinfo | Intel(R) Xeon(R) CPU E5-2683 v4 @ 2.10GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 84598 (23 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-08-19 14:06:41 |
| Input files | usertests:000793_reco_data_2024-08-16T_162901Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-08-19 17:18:40 |
| Saved logs | justin-logs:244936.1-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1281 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 19-Aug-2024 07:29:42 PDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'largeant': 678251670
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 19-Aug-2024 07:29:42 PDT run: 20000031 subRun: 0 event: 335 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 19-Aug-2024 07:31:52 PDT run: 20000031 subRun: 0 event: 335
Not Stored Process summary:
compt : 1791680
Pair : 78
annihil : 86002
phot : 575211
Brem : 527959
conv : 85924
Ion : 226220
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 07:31:52 PDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 07:31:52 PDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 07:31:52 PDT run: 20000031 subRun: 0 event: 335 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 19-Aug-2024 07:31:53 PDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 497143033
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 19-Aug-2024 07:32:02 PDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'elecDrift': 238155930
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 07:33:34 PDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.photon': 159279575
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 07:33:34 PDT run: 20000031 subRun: 0 event: 335
Random seed for this event, engine 'PDFastSim.scinttime': 710343838
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
IonAndScint endJob.
19-Aug-2024 10:18:15 PDT Closed input file "root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/a9/f1/000793_reco_data_2024-08-16T_162901Z.root"
================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
================================================================================================================================
Full event 0.0103523 33.7019 10037 0.349768 547.601 335
--------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read) 8.7656e-05 0.000970488 0.0539217 0.000139232 0.0064564 335
simulate:rns:RandomNumberSaver 2.271e-05 3.05521e-05 0.000244296 2.8187e-05 1.32228e-05 335
simulate:largeant:larg4Main 0.00927448 1.14676 130.756 0.335866 7.53498 335
simulate:IonAndScint:IonAndScint 9.2491e-05 0.0305664 9.28987 0.00012994 0.506855 335
simulate:elecDrift:SimDriftElectrons 5.761e-05 0.304115 91.9156 6.9846e-05 5.01504 335
simulate:PDFastSim:PDFastSimPAR 8.2949e-05 32.2171 9805.03 0.000112238 534.977 335
simulate:muonfilter:LArG4ParticleFilter 1.6636e-05 6.79297e-05 0.00271148 2.3097e-05 0.00024075 335
[art]:TriggerResults:TriggerResultInserter 1.3473e-05 1.7303e-05 4.8931e-05 1.6509e-05 3.44318e-06 335
end_path:out1:RootOutput 7.848e-06 1.20327e-05 0.000243805 1.082e-05 1.2889e-05 335
end_path:out1:RootOutput(write) 5.814e-06 0.00151937 0.505229 6.4725e-06 0.0276031 334
================================================================================================================================
%MSG-i NuRandomService: RootOutput:out1@EndJob 19-Aug-2024 10:18:15 PDT ModuleEndJob
Summary of seeds computed by the NuRandomService
Random policy: 'perEvent'
algorithm version: EventTimestamp_v1
Configured value Last value ModuleLabel.InstanceName
(per event) 497143033 IonAndScint.ISCalcAlg
(per event) 159279575 PDFastSim.photon
(per event) 710343838 PDFastSim.scinttime
(per event) 238155930 elecDrift
(per event) 678251670 largeant
%MSG
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 16443.4 MB
Peak resident set size usage (VmHWM): 13015.2 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 335 passed = 2 failed = 333
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 2 2 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 11273.561173 Real = 11387.804756
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 16443.4 VmHWM = 13015.2
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 81512
-rw-r--r-- 1 nilic nilic 82195603 Aug 19 10:18 RootOutput-a0bc-9aea-82fb-cf67.root
-rw-r--r-- 1 nilic nilic 1249587 Aug 19 10:18 000793_reco_data_2024-08-16T_162901Z_reco_2024-08-19T_140645Z.log
-rw-r--r-- 1 nilic nilic 7900 Aug 19 10:18 jobscript.log
-rw-r--r-- 1 nilic nilic 274 Aug 19 07:06 TFileService-8ae5-fc6c-abe6-2cb1.root
-rw-r--r-- 1 nilic nilic 104 Aug 19 07:06 all-input-dids.txt
-rw-r--r-- 1 nilic nilic 0 Aug 19 10:18 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_140645Z.root.ext.json
-rw-r--r-- 1 nilic nilic 0 Aug 19 10:18 000793_reco_data_2024-08-16T_162901Z_reco_data_2024-08-19T_140645Z.root.json 