Jobsub ID 244933.18@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 244933.18@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 2869 |
| Stage ID | 1 |
| User name | amoor@fnal.gov |
| HTCondor Group | group_dune |
| Requested | Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 80000 (22 hours) |
| Submitted time | 2024-08-19 13:54:26 |
| Site | US_FNAL-FermiGrid |
| Entry | FNAL_GPGrid_ce03_mcore_op_duneonly |
| Last heartbeat | 2024-08-19 16:46:05 |
| From worker node | Hostname | dunegli-3933848-0-fnpc17156.fnal.gov |
| cpuinfo | Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4194304000 (4000 MiB) |
| Wall seconds limit | 172800 (48 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-08-19 13:56:28 |
| Input files | usertests:000525_reco_data_2024-08-16T_162442Z.root
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-08-19 16:46:05 |
| Saved logs | justin-logs:244933.18-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/8d/cd/000525_reco_data_2024-08-16T_162442Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72: 1280 Segmentation fault (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924
Not Stored Process summary:
compt : 13617
Pair : 40
annihil : 500
phot : 3865
Brem : 3576
conv : 460
Ion : 3900
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 729427713
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'elecDrift': 492744567
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'PDFastSim.photon': 432566334
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'PDFastSim.scinttime': 94333478
%MSG
%MSG-w ParticleInventory: ProcessEvent 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory: ProcessEvent 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory: ProcessEvent 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w BackTrackerService: ProcessEvent 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Rebuild failed to get the SimChannels. This is expected when running on a generation or simulation step.
%MSG
%MSG-w PhotonBackTrackerService: ProcessEvent 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'largeant': 478930457
%MSG
%MSG-i generatePrimaries: larg4Main:largeant@BeginModule 19-Aug-2024 14:53:18 UTC run: 20000031 subRun: 0 event: 925 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService: larg4Main:largeant@BeginModule 19-Aug-2024 14:55:04 UTC run: 20000031 subRun: 0 event: 925
Not Stored Process summary:
compt : 1368602
Pair : 28
annihil : 65920
phot : 442413
Brem : 406687
conv : 65888
Ion : 175306
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:55:04 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:55:04 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction: larg4Main:largeant@BeginModule 19-Aug-2024 14:55:04 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService: IonAndScint:IonAndScint@BeginModule 19-Aug-2024 14:55:04 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 243633339
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService: SimDriftElectrons:elecDrift@BeginModule 19-Aug-2024 14:55:14 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'elecDrift': 535511681
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 14:56:50 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'PDFastSim.photon': 123691757
%MSG
%MSG-i NuRandomService: PDFastSimPAR:PDFastSim@BeginModule 19-Aug-2024 14:56:50 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'PDFastSim.scinttime': 767449757
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
main()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
mddict = expSpecificMetadata.getmetadata()
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
jobt = self.get_job(proc)
File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 259820
-rw-r--r-- 1 dunegli fnalgrid 262700999 Aug 19 16:45 RootOutput-35f0-76f6-2b5f-4e54.root
-rw-r--r-- 1 dunegli fnalgrid 3328001 Aug 19 16:45 000525_reco_data_2024-08-16T_162442Z_reco_2024-08-19T_135634Z.log
-rw-r--r-- 1 dunegli fnalgrid 7388 Aug 19 16:45 jobscript.log
-rw-r--r-- 1 dunegli fnalgrid 274 Aug 19 13:56 TFileService-5e65-fac2-1940-ba60.root
-rw-r--r-- 1 dunegli fnalgrid 104 Aug 19 13:56 all-input-dids.txt
-rw-r--r-- 1 dunegli fnalgrid 0 Aug 19 16:45 000525_reco_data_2024-08-16T_162442Z_reco_data_2024-08-19T_135634Z.root.ext.json
-rw-r--r-- 1 dunegli fnalgrid 0 Aug 19 16:45 000525_reco_data_2024-08-16T_162442Z_reco_data_2024-08-19T_135634Z.root.json 