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Jobsub ID 244856.48@justin-prod-sched01.dune.hep.ac.uk

Jobsub ID244856.48@justin-prod-sched01.dune.hep.ac.uk
Workflow ID2869
Stage ID1
User nameamoor@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2024-08-19 10:54:01
SiteUS_FNAL-FermiGrid
EntryFNAL_GPGrid_ce03_mcore_op_duneonly
Last heartbeat2024-08-19 13:53:41
From worker nodeHostnamedunegli-3933848-0-fnpc17156.fnal.gov
cpuinfoIntel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes4194304000 (4000 MiB)
Wall seconds limit172800 (48 hours)
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2024-08-19 11:22:04
Input filesusertests:000525_reco_data_2024-08-16T_162442Z.root
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Outputting started 
Output files
Finished2024-08-19 13:53:41
Saved logsjustin-logs:244856.48-justin-prod-sched01.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

AFM g4 jobscript.
Input PFN = root://fndca1.fnal.gov:1094/pnfs/fnal.gov/usr/dune/persistent/staging/usertests/8d/cd/000525_reco_data_2024-08-16T_162442Z.root
Setting up larsoft UPS area... /cvmfs/larsoft.opensciencegrid.org
Setting up DUNE UPS area... /cvmfs/dune.opensciencegrid.org/products/dune/
/cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_4_3b/Linux64bit+3.10-2.17-e20-p3913-prof/lib/libXrdPosixPreload.so
../justin-jobscript: line 72:  1282 Segmentation fault      (core dumped) lar -c $FCL_FILE $events_option -o $outFile "$pfn" > ${fname}_reco_${now}.log 2>&1
=== Start last 100 lines of lar log file ===
Generating 1 particles
%MSG
%MSG-i ParticleListActionService:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924
Not Stored Process summary:
	compt : 13617
	Pair : 40
	annihil : 500
	phot : 3865
	Brem : 3576
	conv : 460
	Ion : 3900
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService:  IonAndScint:IonAndScint@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 729427713
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService:  SimDriftElectrons:elecDrift@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'elecDrift': 492744567
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'PDFastSim.photon': 432566334
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 924
Random seed for this event, engine 'PDFastSim.scinttime': 94333478
%MSG
%MSG-w ParticleInventory:  ProcessEvent 19-Aug-2024 12:04:27 UTC  run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory:  ProcessEvent 19-Aug-2024 12:04:27 UTC  run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w ParticleInventory:  ProcessEvent 19-Aug-2024 12:04:27 UTC  run: 20000031 subRun: 0 event: 925
Rebuild failed to get the MCParticles. This is expected when running on a generation or simulation step.
%MSG
%MSG-w BackTrackerService:  ProcessEvent 19-Aug-2024 12:04:27 UTC  run: 20000031 subRun: 0 event: 925
Rebuild failed to get the SimChannels. This is expected when running on a generation or simulation step.
%MSG
%MSG-w PhotonBackTrackerService:  ProcessEvent 19-Aug-2024 12:04:27 UTC  run: 20000031 subRun: 0 event: 925
Rebuild failed to get the OpDetBTRs. This is expected when running on a generation or simulation step.
%MSG
%MSG-i NuRandomService:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'largeant': 478930457
%MSG
%MSG-i generatePrimaries:  larg4Main:largeant@BeginModule  19-Aug-2024 12:04:27 UTC run: 20000031 subRun: 0 event: 925 MCTruthEventAction.cc:112
Generating 1 particles
%MSG
%MSG-i ParticleListActionService:  larg4Main:largeant@BeginModule  19-Aug-2024 12:05:38 UTC run: 20000031 subRun: 0 event: 925
Not Stored Process summary:
	compt : 1368602
	Pair : 28
	annihil : 65920
	phot : 442413
	Brem : 406687
	conv : 65888
	Ion : 175306
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:05:38 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:701
MCTruth Handles Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:05:38 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:708
mclistHandle Size: 1
%MSG
%MSG-i endOfEventAction:  larg4Main:largeant@BeginModule  19-Aug-2024 12:05:38 UTC run: 20000031 subRun: 0 event: 925 ParticleListAction.cc:711
Found 1 particles
%MSG
%MSG-i NuRandomService:  IonAndScint:IonAndScint@BeginModule  19-Aug-2024 12:05:38 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'IonAndScint.ISCalcAlg': 243633339
%MSG
IonAndScint Module Producer
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneUInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneVInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCPlaneZInner
SimEnergyDeposit input module: largeant, instance name: LArG4DetectorServicevolTPCActiveOuter
%MSG-i NuRandomService:  SimDriftElectrons:elecDrift@BeginModule  19-Aug-2024 12:05:44 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'elecDrift': 535511681
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  19-Aug-2024 12:06:50 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'PDFastSim.photon': 123691757
%MSG
%MSG-i NuRandomService:  PDFastSimPAR:PDFastSim@BeginModule  19-Aug-2024 12:06:50 UTC run: 20000031 subRun: 0 event: 925
Random seed for this event, engine 'PDFastSim.scinttime': 767449757
%MSG
Plugin version SecClnt v5.4.3 is incompatible with secztn v5.6.8 (must be <= 5.4.x) in sec.protocol libXrdSecztn-5.so
=== End last 100 lines of lar log file ===
lar exit code 0
Traceback (most recent call last):
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 434, in <module>
    main()
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 373, in main
    mddict = expSpecificMetadata.getmetadata()
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 344, in getmetadata
    jobt = self.get_job(proc)
  File "/cvmfs/dune.opensciencegrid.org/products/dune/duneutil/v09_75_03d00/bin/extractor_prod.py", line 69, in get_job
    raise RuntimeError('sam_metadata_dumper returned nonzero exit status {}.'.format(rc))
RuntimeError: sam_metadata_dumper returned nonzero exit status 1.
extractor_prod.py exit code 1
Error reading metadata from file: Expecting value: line 1 column 1 (char 0)
pdjson2metadata exit code 1
.:
total 259820
-rw-r--r-- 1 dunegli fnalgrid 262700999 Aug 19 13:53 RootOutput-b1a3-ad1f-25e5-eff7.root
-rw-r--r-- 1 dunegli fnalgrid   3328001 Aug 19 13:53 000525_reco_data_2024-08-16T_162442Z_reco_2024-08-19T_112208Z.log
-rw-r--r-- 1 dunegli fnalgrid      7388 Aug 19 13:53 jobscript.log
-rw-r--r-- 1 dunegli fnalgrid       274 Aug 19 11:22 TFileService-432d-0c3c-7a70-6471.root
-rw-r--r-- 1 dunegli fnalgrid       104 Aug 19 11:22 all-input-dids.txt
-rw-r--r-- 1 dunegli fnalgrid         0 Aug 19 13:53 000525_reco_data_2024-08-16T_162442Z_reco_data_2024-08-19T_112208Z.root.ext.json
-rw-r--r-- 1 dunegli fnalgrid         0 Aug 19 13:53 000525_reco_data_2024-08-16T_162442Z_reco_data_2024-08-19T_112208Z.root.json
justIN time: 2024-11-17 10:35:19 UTC       justIN version: 01.01.09