Jobsub ID 244854.0@justin-prod-sched01.dune.hep.ac.uk
| Jobsub ID | 244854.0@justin-prod-sched01.dune.hep.ac.uk |
| Workflow ID | 2867 |
| Stage ID | 1 |
| User name | calcuttj@fnal.gov |
| HTCondor Group | group_dune.prod_mcsim |
| Requested | Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 18000 (5 hours) |
| Submitted time | 2024-08-19 09:17:12 |
| Site | NL_NIKHEF |
| Entry | VIRGO_NL_NIKHEF_klomp |
| Last heartbeat | 2024-08-19 09:39:39 |
| From worker node | Hostname | wn-pep-015.farm.nikhef.nl |
| cpuinfo | Intel(R) Xeon(R) Gold 6148 CPU @ 2.40GHz |
| OS release | Scientific Linux release 7.9 (Nitrogen) |
| Processors | 1 |
| RSS bytes | 4193255424 (3999 MiB) |
| Wall seconds limit | 129600 (36 hours) |
| Inner Apptainer? | True |
| Job state | jobscript_error |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk |
| Started | 2024-08-19 09:18:12 |
| Input files | hd-protodune:np04hd_raw_run028762_1500_dataflow6_datawriter_0_20240819T031801.hdf5
|
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) |
| CPU time | 0m (0s = 0%) |
| Outputting started | |
| Output files | |
| Finished | 2024-08-19 09:39:39 |
| Saved logs | justin-logs:244854.0-justin-prod-sched01.dune.hep.ac.uk.logs.tgz |
| List job events Wrapper job log |
Jobscript log (last 10,000 characters)
annel for 13 0 24
WARNING: Could not find offline channel for 13 0 25
WARNING: Could not find offline channel for 13 0 26
WARNING: Could not find offline channel for 13 0 27
WARNING: Could not find offline channel for 13 0 30
WARNING: Could not find offline channel for 13 0 31
WARNING: Could not find offline channel for 13 0 32
WARNING: Could not find offline channel for 13 0 33
WARNING: Could not find offline channel for 13 0 34
WARNING: Could not find offline channel for 13 0 35
WARNING: Could not find offline channel for 13 0 36
WARNING: Could not find offline channel for 13 0 37
WARNING: Could not find offline channel for 13 0 40
WARNING: Could not find offline channel for 13 0 41
WARNING: Could not find offline channel for 13 0 42
WARNING: Could not find offline channel for 13 0 43
WARNING: Could not find offline channel for 13 0 44
WARNING: Could not find offline channel for 13 0 45
WARNING: Could not find offline channel for 13 0 46
WARNING: Could not find offline channel for 13 0 47
WARNING: Could not find offline channel for 13 0 1
WARNING: Could not find offline channel for 13 0 3
WARNING: Could not find offline channel for 13 0 4
WARNING: Could not find offline channel for 13 0 6
WARNING: Could not find offline channel for 13 0 10
WARNING: Could not find offline channel for 13 0 11
WARNING: Could not find offline channel for 13 0 12
WARNING: Could not find offline channel for 13 0 13
WARNING: Could not find offline channel for 13 0 14
WARNING: Could not find offline channel for 13 0 15
WARNING: Could not find offline channel for 13 0 16
WARNING: Could not find offline channel for 13 0 17
WARNING: Could not find offline channel for 13 0 20
WARNING: Could not find offline channel for 13 0 21
WARNING: Could not find offline channel for 13 0 22
WARNING: Could not find offline channel for 13 0 23
WARNING: Could not find offline channel for 13 0 24
WARNING: Could not find offline channel for 13 0 25
WARNING: Could not find offline channel for 13 0 26
WARNING: Could not find offline channel for 13 0 27
WARNING: Could not find offline channel for 13 0 30
WARNING: Could not find offline channel for 13 0 31
WARNING: Could not find offline channel for 13 0 32
WARNING: Could not find offline channel for 13 0 33
WARNING: Could not find offline channel for 13 0 34
WARNING: Could not find offline channel for 13 0 35
WARNING: Could not find offline channel for 13 0 36
WARNING: Could not find offline channel for 13 0 37
WARNING: Could not find offline channel for 13 0 40
WARNING: Could not find offline channel for 13 0 41
WARNING: Could not find offline channel for 13 0 42
WARNING: Could not find offline channel for 13 0 43
WARNING: Could not find offline channel for 13 0 44
WARNING: Could not find offline channel for 13 0 45
WARNING: Could not find offline channel for 13 0 46
WARNING: Could not find offline channel for 13 0 47
RawFrameSource: got 10240 raw::RawDigit objects
input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
19-Aug-2024 11:38:22 CEST Closed output file "np04hd_raw_run028762_1500_dataflow6_datawriter_0_20240819T031801_reco_stage1.root"
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 37.5451 38.2533 39.2021 38.2194 0.434176 30
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.9751e-05 3.29548e-05 0.000130648 2.6439e-05 2.08267e-05 30
produce:tpcrawdecoder:PDHDTPCReader 8.32869 8.68446 9.05954 8.67242 0.201219 30
produce:triggerrawdecoder:PDHDTriggerReader3 0.460664 0.477377 0.500095 0.478424 0.00959995 30
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0170263 0.0172302 0.0198139 0.0171286 0.000485557 30
produce:pdhddaphne:DAPHNEReaderPDHD 10.6845 11.3015 11.8803 11.3253 0.32767 30
produce:fembfilter:PDHDFEMBFilter 0.000109146 0.000201119 0.000634109 0.000123382 0.000128007 30
produce:wclsdatahdfilter:WireCellToolkit 12.8081 13.1487 13.6235 13.0998 0.195493 30
[art]:TriggerResults:TriggerResultInserter 1.6703e-05 2.51449e-05 7.5808e-05 2.3957e-05 1.0269e-05 30
end_path:out1:RootOutput 2.528e-06 4.99043e-06 2.0289e-05 4.5115e-06 3.21346e-06 30
end_path:out1:RootOutput(write) 4.53664 4.62277 4.88331 4.60714 0.079977 30
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 3263.82 MB
Peak resident set size usage (VmHWM): 1812.18 MB
Details saved in: 'mem.db'
====================================================================================================
Art has completed and will exit with status 0.
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
calibana
crtreco
crttag
opdec
opflash
ophitspe
opslicer
pdhddaphne
timingrawdecoder
tpcrawdecoder
triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v09_91_02d01/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
tf_graph loaded ProtoBuf graph with status: OK
Inputer: "wclsRawFrameSource"
Outputer: "wclsFrameSaver:spsaver"
wclsFrameSaver: promising to produce recob::Wires named "gauss"
wclsFrameSaver: promising to produce recob::Wires named "wiener"
wclsFrameSaver: promising to produce channel summary named "threshold"
19-Aug-2024 11:38:52 CEST Initiating request to open input file "np04hd_raw_run028762_1500_dataflow6_datawriter_0_20240819T031801_reco_stage1.root"
19-Aug-2024 11:38:52 CEST Opened input file "np04hd_raw_run028762_1500_dataflow6_datawriter_0_20240819T031801_reco_stage1.root"
AdaBoostDecisionTree::Initialize - Invalid xml file.
BdtBeamParticleIdTool::ReadSettings - unable to load bdt
pLocalAlgorithmTool->ReadSettings(TiXmlHandle(pXmlElement)) throw STATUS_CODE_INVALID_PARAMETER
in function: CreateAlgorithmTool
in file: /scratch/workspace/build-larbase/BUILDTYPE/prof/QUAL/s131-e26/label1/swarm/label2/SLF7/build/pandora/v03_16_00l/src/pandora-v03-16-00/PandoraSDK-v03-04-01/src/Managers/AlgorithmManager.cc line#: 177
Failure in reading pandora settings, STATUS_CODE_INVALID_PARAMETER
PandoraApi::ReadSettings(*m_pPrimaryPandora, fullConfigFileName) throw STATUS_CODE_FAILURE
in function: ConfigurePandoraInstances
in file: /scratch/workspace/build-larsoft/BUILDTYPE/prof/QUAL/s131-e26/label1/swarm/label2/AlmaLinux-9.4/build/larpandora/v09_22_09-buildFW/src/larpandora/LArPandoraInterface/StandardPandora_module.cc line#: 120
19-Aug-2024 11:39:20 CEST Closed input file "np04hd_raw_run028762_1500_dataflow6_datawriter_0_20240819T031801_reco_stage1.root"
====================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
====================================================================================================================
[ No processed events ]
====================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 3397.3 MB
Peak resident set size usage (VmHWM): 1080.46 MB
Details saved in: 'mem.db'
====================================================================================================
MultiPandoraApiImpl::DeletePandoraInstances - unable to find daughter instances associated with primary 0
%MSG-s ArtException: PostEndJob 19-Aug-2024 11:39:21 CEST ModuleEndJob
---- Unknown BEGIN
An unknown exception was thrown while processing module StandardPandora/pandora during beginJob
---- Unknown END
%MSG
Art has completed and will exit with status 1.
Error in reco2 