justIN           Dashboard       Workflows       Jobs       AWT       Sites       Storages       Docs       Login

21 July 2025: This instance at RAL is read-only. Please do not try submitting new workflows for now.

Jobsub ID 226008.25@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID226008.25@justin-prod-sched02.dune.hep.ac.uk
Workflow ID7784
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes8387559424 (7999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-06-19 23:15:48
SiteES_PIC
EntryDUNE_T1_ES_PIC_ce16-multicore
Last heartbeat2025-06-20 02:22:36
From worker nodeHostnametds520.pic.es
cpuinfoAMD EPYC 7513 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes8387559424 (7999 MiB)
Wall seconds limit216000 (60 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-06-20 01:52:33
Input fileshd-protodune:np04hd_raw_run027087_1161_dataflow1_datawriter_0_20240615T010728.hdf5
JobscriptExit code65
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-06-20 02:22:36
Saved logsjustin-logs:226008.25-justin-prod-sched02.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

aw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
20-Jun-2025 04:21:34 CEST  Closed output file "pdhd_processing_1_226008_25_1750384366_stage1.root"

===================================================================================================================================
TimeTracker printout (sec)                           Min           Avg           Max         Median          RMS         nEvts   
===================================================================================================================================
Full event                                         36.4268       41.4114       45.7328       41.5072       1.67235        40     
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                       2.8013e-05    3.90194e-05   0.000220846   3.3112e-05    2.98468e-05      40     
produce:tpcrawdecoder:PDHDTPCReader                16.9489       18.9421       22.9531       18.6754       1.29282        40     
produce:triggerrawdecoder:PDHDTriggerReader3      0.0842182     0.0846686     0.0892617     0.0844999    0.000819004      40     
produce:timingrawdecoder:PDHDTimingRawDecoder     0.0421741     0.042385      0.0440261     0.0423443    0.000289723      40     
produce:pdhddaphne:DAPHNEReaderPDHD              0.000382891   0.000488111   0.00140433    0.00046457    0.000150197      40     
produce:fembfilter:PDHDFEMBFilter                6.8449e-05    0.000100201   0.000593477   8.4619e-05    8.05872e-05      40     
produce:wclsdatahdfilter:WireCellToolkit           13.1339       16.3277       17.9957       16.6521      0.982538        40     
[art]:TriggerResults:TriggerResultInserter       1.6592e-05    3.58544e-05   0.000130375   3.12085e-05   1.95657e-05      40     
end_path:out1:RootOutput                          3.877e-06    5.88635e-06   3.2181e-05     5.08e-06     4.30231e-06      40     
end_path:out1:RootOutput(write)                    4.45545       6.01238       6.65105       6.15923      0.501708        40     
===================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 3097.75 MB
  Peak resident set size usage (VmHWM): 1571.38 MB
  Details saved in: 'mem.db'
====================================================================================================

{'art_out': 'pdhd_processing_1_226008_25_1750384366_stage1.root'}
stage2
Running stage2
['lar', '-c', 'standard_reco_stage2_calibration_protodunehd_keepup.fcl', 'pdhd_processing_1_226008_25_1750384366_stage1.root', '-n', '-1', '--nskip', '0', '-o', 'pdhd_processing_1_226008_25_1750384366_stage1_stage2.root', '-T', 'pdhd_processing_1_226008_25_1750384366_stage1_stage2_tfile.root']
ld_preload /cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_5_5a/Linux64bit+3.10-2.17-e26-p3915-prof/lib/libXrdPosixPreload.so
Stdout:
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Art has completed and will exit with status 65.

Stderr:
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 04:22:10 CEST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error in processing stage2
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 04:22:10 CEST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error running. Exiting with 65
justIN time: 2025-08-15 01:29:11 UTC       justIN version: 01.03.02