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Jobsub ID 225943.1@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID225943.1@justin-prod-sched02.dune.hep.ac.uk
Workflow ID7781
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes8387559424 (7999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-06-19 21:24:39
SiteUK_RAL-PPD
EntryCMSHTPC_T2_UK_SGrid_RALPP_hep206
Last heartbeat2025-06-20 02:09:58
From worker nodeHostnameheplnc136.pp.rl.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 6130 CPU @ 2.10GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes8387559424 (7999 MiB)
Wall seconds limit257400 (71 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-06-20 01:44:52
Input fileshd-protodune:np04hd_raw_run027087_0153_dataflow0_datawriter_0_20240614T160728.hdf5
JobscriptExit code65
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-06-20 02:09:58
Saved logsjustin-logs:225943.1-justin-prod-sched02.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
20-Jun-2025 03:08:54 BST  Closed output file "pdhd_processing_1_225943_1_1750383903_stage1.root"

===================================================================================================================================
TimeTracker printout (sec)                           Min           Avg           Max         Median          RMS         nEvts   
===================================================================================================================================
Full event                                         28.3502       34.3924       42.6742       34.2637       3.13275        40     
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                       2.5638e-05    6.35103e-05   0.000200147   6.1263e-05     3.528e-05       40     
produce:tpcrawdecoder:PDHDTPCReader                6.58699       7.23207       8.28231       7.21908      0.309052        40     
produce:triggerrawdecoder:PDHDTriggerReader3      0.0169703     0.0176059     0.0236573     0.017444     0.000988013      40     
produce:timingrawdecoder:PDHDTimingRawDecoder    0.00850087     0.0087402    0.00924297    0.00874443    0.000132256      40     
produce:pdhddaphne:DAPHNEReaderPDHD              0.000486269   0.000727222   0.00117347    0.000718071   0.000105389      40     
produce:fembfilter:PDHDFEMBFilter                8.2305e-05    0.000127103   0.000476844   0.000116999   5.82321e-05      40     
produce:wclsdatahdfilter:WireCellToolkit           15.0063       19.5532       24.069        19.3714       2.24821        40     
[art]:TriggerResults:TriggerResultInserter        1.851e-05    3.97152e-05   8.3196e-05    3.57175e-05   1.43731e-05      40     
end_path:out1:RootOutput                          3.157e-06    6.34707e-06   2.0521e-05    6.3645e-06    2.76061e-06      40     
end_path:out1:RootOutput(write)                    5.49335       7.57829       16.366        7.34173       1.76327        40     
===================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 3109.06 MB
  Peak resident set size usage (VmHWM): 1588.55 MB
  Details saved in: 'mem.db'
====================================================================================================

{'art_out': 'pdhd_processing_1_225943_1_1750383903_stage1.root'}
stage2
Running stage2
['lar', '-c', 'standard_reco_stage2_calibration_protodunehd_keepup.fcl', 'pdhd_processing_1_225943_1_1750383903_stage1.root', '-n', '-1', '--nskip', '0', '-o', 'pdhd_processing_1_225943_1_1750383903_stage1_stage2.root', '-T', 'pdhd_processing_1_225943_1_1750383903_stage1_stage2_tfile.root']
ld_preload /cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_5_5a/Linux64bit+3.10-2.17-e26-p3915-prof/lib/libXrdPosixPreload.so
Stdout:
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Art has completed and will exit with status 65.

Stderr:
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 03:09:36 BST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error in processing stage2
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 03:09:36 BST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error running. Exiting with 65
justIN time: 2025-08-15 06:40:56 UTC       justIN version: 01.03.02