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Jobsub ID 225933.18@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID225933.18@justin-prod-sched02.dune.hep.ac.uk
Workflow ID7783
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes8387559424 (7999 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-06-19 20:10:15
SiteUK_Durham
EntryDUNE_UK_SGridDurham_ce3
Last heartbeat2025-06-20 02:23:47
From worker nodeHostnamen152.dur.scotgrid.ac.uk
cpuinfoIntel(R) Xeon(R) Gold 5120 CPU @ 2.20GHz
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes8387559424 (7999 MiB)
Wall seconds limit171000 (47 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-06-20 01:43:42
Input fileshd-protodune:np04hd_raw_run027087_0970_dataflow0_datawriter_0_20240614T232542.hdf5
JobscriptExit code65
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-06-20 02:23:47
Saved logsjustin-logs:225933.18-justin-prod-sched02.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

g raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
RawFrameSource: got 10240 raw::RawDigit objects
	input nticks=5859 keeping as is
Retagger: tagging trace set: raw with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "raw"
wclsFrameSaver: found empty channel masks for "bad"
20-Jun-2025 03:22:53 BST  Closed output file "pdhd_processing_1_225933_18_1750383833_stage1.root"

===================================================================================================================================
TimeTracker printout (sec)                           Min           Avg           Max         Median          RMS         nEvts   
===================================================================================================================================
Full event                                         52.1512       56.096        58.455        56.0477       1.51099        40     
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read)                       2.2843e-05    3.61873e-05   0.000149416   3.56665e-05   1.99572e-05      40     
produce:tpcrawdecoder:PDHDTPCReader                31.6618       35.3841       37.4225       35.4533       1.46657        40     
produce:triggerrawdecoder:PDHDTriggerReader3      0.0415032     0.0417212     0.0443812     0.0416259    0.00044557       40     
produce:timingrawdecoder:PDHDTimingRawDecoder     0.0207663     0.0208808     0.0220882     0.0208441    0.000199489      40     
produce:pdhddaphne:DAPHNEReaderPDHD              0.000503422   0.00053976    0.000872914   0.000529595   5.8599e-05       40     
produce:fembfilter:PDHDFEMBFilter                 8.056e-05    9.71299e-05   0.000365406   9.0046e-05    4.34145e-05      40     
produce:wclsdatahdfilter:WireCellToolkit           15.0966       15.467        17.0811       15.4073      0.318735        40     
[art]:TriggerResults:TriggerResultInserter        1.812e-05    2.80145e-05   8.6856e-05    2.8655e-05    1.09547e-05      40     
end_path:out1:RootOutput                          2.89e-06     6.97412e-06   2.3274e-05     6.626e-06    3.8591e-06       40     
end_path:out1:RootOutput(write)                    5.11508       5.18064       5.54132       5.15888      0.0778609       40     
===================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 3095.81 MB
  Peak resident set size usage (VmHWM): 1582.67 MB
  Details saved in: 'mem.db'
====================================================================================================

{'art_out': 'pdhd_processing_1_225933_18_1750383833_stage1.root'}
stage2
Running stage2
['lar', '-c', 'standard_reco_stage2_calibration_protodunehd_keepup.fcl', 'pdhd_processing_1_225933_18_1750383833_stage1.root', '-n', '-1', '--nskip', '0', '-o', 'pdhd_processing_1_225933_18_1750383833_stage1_stage2.root', '-T', 'pdhd_processing_1_225933_18_1750383833_stage1_stage2_tfile.root']
ld_preload /cvmfs/larsoft.opensciencegrid.org/products/xrootd/v5_5_5a/Linux64bit+3.10-2.17-e26-p3915-prof/lib/libXrdPosixPreload.so
Stdout:
DAPHNE Channel Map: Building DAPHNE channel map from file DAPHNE_test5_ChannelMap_v1.txt
PD2HD Channel Map: Building TPC wiremap from file PD2HDChannelMap_WIBEth_electronics_v1.txt
Art has completed and will exit with status 65.

Stderr:
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 03:23:26 BST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error in processing stage2
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  calibana
  crtreco
  crttag
  opdec
  opflash
  ophitspe
  opslicer
  pdhddaphne
  timingrawdecoder
  tpcrawdecoder
  triggerrawdecoder
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_04_06d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25610 nodes/ 5537 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
%MSG-s ArtException:  CalibAnaTree:calibanagnocchi@Construction  20-Jun-2025 03:23:26 BST ModuleConstruction
cet::exception caught in art
---- Can't find key BEGIN
  Is3ViewsCoincidence 
---- Can't find key END
%MSG

Error running. Exiting with 65
justIN time: 2025-08-15 03:02:05 UTC       justIN version: 01.03.02