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Jobsub ID 225132.25@justin-prod-sched02.dune.hep.ac.uk

Jobsub ID225132.25@justin-prod-sched02.dune.hep.ac.uk
Workflow ID7757
Stage ID1
User namecalcuttj@fnal.gov
HTCondor Groupgroup_dune
RequestedProcessors1
GPUNo
RSS bytes2097152000 (2000 MiB)
Wall seconds limit80000 (22 hours)
Submitted time2025-06-18 23:38:45
SiteNL_NIKHEF
EntryVIRGO_NL_NIKHEF_juk
Last heartbeat2025-06-19 00:03:54
From worker nodeHostnamewn-sate-040.farm.nikhef.nl
cpuinfoAMD EPYC 7551P 32-Core Processor
OS releaseScientific Linux release 7.9 (Nitrogen)
Processors1
RSS bytes2097152000 (2000 MiB)
Wall seconds limit129600 (36 hours)
GPU
Inner Apptainer?True
Job statejobscript_error
Allocator namejustin-allocator-pro.dune.hep.ac.uk
Started2025-06-18 23:40:18
Input filesmonte-carlo-007757-000090
JobscriptExit code1
Real time0m (0s)
CPU time0m (0s = 0%)
Max RSS bytes0 (0 MiB)
Outputting started 
Output files
Finished2025-06-19 00:03:54
Saved logsjustin-logs:225132.25-justin-prod-sched02.dune.hep.ac.uk.logs.tgz
List job events     Wrapper job log

Jobscript log (last 10,000 characters)

loseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
registering to  primaryGeneratorActionsMap_
registering to   eventActionsMap_
registering to   trackingActionsMap_
registering to  steppingActionsMap_
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).
Inputer: "wclsSimDepoSource:"
Outputer: "wclsSimChannelSink:postdrift"
Outputer: "wclsFrameSaver:simdigits"
wclsFrameSaver: promising to produce raw::RawDigits named "daq"
19-Jun-2025 01:49:56 CEST  Initiating request to open input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"
19-Jun-2025 01:49:57 CEST  Opened input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"
SimDepoSource got 1107789 depos from art tag "InputTag: label = 'IonAndScint', instance = ''" returns: okay
SimDepoSource: ready with 1107789 depos spanning: [-3311.76, 3069.09]us
Retagger: tagging trace set: daq with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "daq"
19-Jun-2025 01:58:21 CEST  Opened output file with pattern "placeholder_1_225132_25_1750290028_stage1_stage2_stage3.root"
SimDepoSource got 1073070 depos from art tag "InputTag: label = 'IonAndScint', instance = ''" returns: okay
SimDepoSource: ready with 1073070 depos spanning: [-3169.31, 3117.73]us
19-Jun-2025 02:02:59 CEST  Closed input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"

===================================================================================================================================
TimeTracker printout (sec)                           Min           Avg           Max         Median          RMS         nEvts   
===================================================================================================================================
Full event                                       0.00976072      251.456       502.902       251.456       251.446         2     
-----------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read)                           0.000994677    0.0053777    0.00976072     0.0053777    0.00438302        2     
simulate:tpcrawdecoderperfect:WireCellToolkit      498.177       498.177       498.177       498.177          0            1     
[art]:TriggerResults:TriggerResultInserter       0.000223209   0.000223209   0.000223209   0.000223209        0            1     
end_path:out1:RootOutput                         5.5063e-05    5.5063e-05    5.5063e-05    5.5063e-05         0            1     
end_path:out1:RootOutput(write)                    3.29497       3.29497       3.29497       3.29497          0            1     
===================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 8313.29 MB
  Peak resident set size usage (VmHWM): 6687.73 MB
  Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException:  PostEndJob 19-Jun-2025 02:03:00 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
  EventProcessor: an exception occurred during current event processing
  ---- ScheduleExecutionFailure BEGIN
    Path: ProcessingStopped.
    ---- BadAlloc BEGIN
      A bad_alloc exception was thrown while processing module WireCellToolkit/tpcrawdecoderperfect run: 225132 subRun: 25 event: 2
      The job has probably exhausted the virtual memory available to the process.
    ---- BadAlloc END
    Exception going through path simulate
  ---- ScheduleExecutionFailure END
---- EventProcessorFailure END
---- FatalRootError BEGIN
  Fatal Root Error: TTree::SetEntries
  Tree branches have different numbers of entries, eg EventAuxiliary has 1 entries while art::TriggerResults_TriggerResults__LArG42. has 10 entries.
  ROOT severity: 2000
---- FatalRootError END
%MSG

Error in processing stage3
The following paths have not been enabled for execution and will be ignored:
  analyze
The following module labels are either not assigned to any path,
or they have been assigned to ignored path(s):
  IonAndScint
  IonAndScintExternal
  cosmicgenerator
  largeant
Info in <TGeoManager::Import>: Reading geometry from file: /cvmfs/dune.opensciencegrid.org/products/dune/dunecore/v10_01_03d00/gdml/protodunehd_v6_refactored.gdml
Info in <TGeoManager::TGeoManager>: Geometry GDMLImport, Geometry imported from GDML created
Info in <TGeoManager::SetTopVolume>: Top volume is volWorld. Master volume is volWorld
Info in <TGeoNavigator::BuildCache>: --- Maximum geometry depth set to 100
Info in <TGeoManager::CheckGeometry>: Fixing runtime shapes...
Info in <TGeoManager::CheckGeometry>: ...Nothing to fix
Info in <TGeoManager::CloseGeometry>: Counting nodes...
Info in <TGeoManager::Voxelize>: Voxelizing...
Info in <TGeoManager::CloseGeometry>: Building cache...
Info in <TGeoManager::CountLevels>: max level = 5, max placements = 1148
Info in <TGeoManager::CloseGeometry>: 25608 nodes/ 5535 volume UID's in Geometry imported from GDML
Info in <TGeoManager::CloseGeometry>: ----------------modeler ready----------------
registering to  primaryGeneratorActionsMap_
registering to   eventActionsMap_
registering to   trackingActionsMap_
registering to  steppingActionsMap_
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_U (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_V (Potential memory leak).
Warning in <TFile::Append>: Replacing existing TH1: FieldResponse_Y (Potential memory leak).
Inputer: "wclsSimDepoSource:"
Outputer: "wclsSimChannelSink:postdrift"
Outputer: "wclsFrameSaver:simdigits"
wclsFrameSaver: promising to produce raw::RawDigits named "daq"
19-Jun-2025 01:49:56 CEST  Initiating request to open input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"
19-Jun-2025 01:49:57 CEST  Opened input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"
SimDepoSource got 1107789 depos from art tag "InputTag: label = 'IonAndScint', instance = ''" returns: okay
SimDepoSource: ready with 1107789 depos spanning: [-3311.76, 3069.09]us
Retagger: tagging trace set: daq with 10240 traces, 0 summary
wclsFrameSaver: saving raw::RawDigits tagged "daq"
19-Jun-2025 01:58:21 CEST  Opened output file with pattern "placeholder_1_225132_25_1750290028_stage1_stage2_stage3.root"
SimDepoSource got 1073070 depos from art tag "InputTag: label = 'IonAndScint', instance = ''" returns: okay
SimDepoSource: ready with 1073070 depos spanning: [-3169.31, 3117.73]us
19-Jun-2025 02:02:59 CEST  Closed input file "placeholder_1_225132_25_1750290028_stage1_stage2.root"

===================================================================================================================================
TimeTracker printout (sec)                           Min           Avg           Max         Median          RMS         nEvts   
===================================================================================================================================
Full event                                       0.00976072      251.456       502.902       251.456       251.446         2     
-----------------------------------------------------------------------------------------------------------------------------------
source:RootInput(read)                           0.000994677    0.0053777    0.00976072     0.0053777    0.00438302        2     
simulate:tpcrawdecoderperfect:WireCellToolkit      498.177       498.177       498.177       498.177          0            1     
[art]:TriggerResults:TriggerResultInserter       0.000223209   0.000223209   0.000223209   0.000223209        0            1     
end_path:out1:RootOutput                         5.5063e-05    5.5063e-05    5.5063e-05    5.5063e-05         0            1     
end_path:out1:RootOutput(write)                    3.29497       3.29497       3.29497       3.29497          0            1     
===================================================================================================================================

====================================================================================================
MemoryTracker summary (base-10 MB units used)

  Peak virtual memory usage (VmPeak)  : 8313.29 MB
  Peak resident set size usage (VmHWM): 6687.73 MB
  Details saved in: 'mem.db'
====================================================================================================
%MSG-s ArtException:  PostEndJob 19-Jun-2025 02:03:00 CEST ModuleEndJob
---- EventProcessorFailure BEGIN
  EventProcessor: an exception occurred during current event processing
  ---- ScheduleExecutionFailure BEGIN
    Path: ProcessingStopped.
    ---- BadAlloc BEGIN
      A bad_alloc exception was thrown while processing module WireCellToolkit/tpcrawdecoderperfect run: 225132 subRun: 25 event: 2
      The job has probably exhausted the virtual memory available to the process.
    ---- BadAlloc END
    Exception going through path simulate
  ---- ScheduleExecutionFailure END
---- EventProcessorFailure END
---- FatalRootError BEGIN
  Fatal Root Error: TTree::SetEntries
  Tree branches have different numbers of entries, eg EventAuxiliary has 1 entries while art::TriggerResults_TriggerResults__LArG42. has 10 entries.
  ROOT severity: 2000
---- FatalRootError END
%MSG

Error running. Exiting with 1
justIN time: 2025-08-21 19:14:57 UTC       justIN version: 01.03.02