Jobsub ID 108319.4@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 108319.4@justin-prod-sched02.dune.hep.ac.uk | |
| Workflow ID | 4201 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-22 16:57:10 | |
| Site | CA_SFU | |
| Entry | DUNE_CA_SFU_lcg-ce3 | |
| Last heartbeat | 2024-11-22 19:58:09 | |
| From worker node | Hostname | cdr1168.int.cedar.computecanada.ca |
| cpuinfo | Intel(R) Xeon(R) Platinum 8160 CPU @ 2.10GHz | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 84598 (23 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-22 17:18:35 | |
| Input files | hd-protodune:np04hd_raw_run028023_0177_dataflow2_datawriter_0_20240716T182855.hdf5 hd-protodune:np04hd_raw_run028023_0178_dataflow0_datawriter_0_20240716T183024.hdf5 hd-protodune:np04hd_raw_run028023_0178_dataflow3_datawriter_0_20240716T183024.hdf5 hd-protodune:np04hd_raw_run028023_0207_dataflow6_datawriter_0_20240716T190607.hdf5 hd-protodune:np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5 | |
| Jobscript | Exit code | 1 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-22 19:58:09 | |
| Saved logs | justin-logs:108319.4-justin-prod-sched02.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
NG: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
WARNING: NONZERO HALF
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 11:57:19 PST run: 28023 subRun: 1 event: 54854 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 22-Nov-2024 11:57:19 PST run: 28023 subRun: 1 event: 54854 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.3389 1.12713
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 98.2549 -1
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 98.8088 1.03844
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 96.6211 0.966068
Timing trigger: 12
Matched: 1
CKovs: 1 0
TOF, P: 94.916 0.930376
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.585 -1
Timing trigger: 12
Matched: 1
CKovs: 0 0
TOF, P: 94.3538 0.926124
Timing trigger: 12
Matched: 1
CKovs: 1 1
TOF, P: 95.501 1.02302
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5F.c line 620 in H5Fopen(): unable to open file
major: File accessibility
minor: Unable to open file
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3501 in H5VL_file_open(): failed to iterate over available VOL connector plugins
major: Virtual Object Layer
minor: Iteration failed
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 578 in H5PL__path_table_iterate(): can't iterate over plugins in plugin path '(null)'
major: Plugin for dynamically loaded library
minor: Iteration failed
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5PLpath.c line 620 in H5PL__path_table_iterate_process_path(): can't open directory: /usr/local/hdf5/lib/plugin
major: Plugin for dynamically loaded library
minor: Can't open directory or file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3351 in H5VL__file_open(): open failed
major: Virtual Object Layer
minor: Can't open object
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 97 in H5VL__native_file_open(): unable to open file
major: File accessibility
minor: Unable to open file
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1834 in H5F_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5', tent_flags = 0
major: File accessibility
minor: Unable to open file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 723 in H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 352 in H5FD__sec2_open(): unable to open file: name = 'root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5', errno = 52, error message = 'Invalid exchange', flags = 0, o_flags = 0
major: File accessibility
minor: Unable to open file
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.65181 70.2885 7220.06 2.98636 633.955 132
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.553e-05 1.92975e-05 9.8439e-05 1.8481e-05 7.16884e-06 132
produce:triggerrawdecoder:PDHDTriggerReader3 1.99841 2.34803 3.27907 2.3217 0.18167 132
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361251 0.445527 0.654178 0.435745 0.0650294 132
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0723323 0.0730154 0.0932974 0.0726202 0.00215661 132
produce:beamevent:BeamEvent 0.000165432 67.2982 7217.01 0.00120266 633.942 132
[art]:TriggerResults:TriggerResultInserter 1.2233e-05 1.61387e-05 9.7548e-05 1.47815e-05 8.36537e-06 132
end_path:out1:RootOutput 2.412e-06 3.35196e-06 1.6934e-05 2.973e-06 1.84967e-06 132
end_path:out1:RootOutput(write) 0.0695967 0.123502 0.347341 0.121634 0.0291461 132
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 2.65181 70.2885 7220.06 2.98636 633.955 132
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.553e-05 1.92975e-05 9.8439e-05 1.8481e-05 7.16884e-06 132
produce:triggerrawdecoder:PDHDTriggerReader3 1.99841 2.34803 3.27907 2.3217 0.18167 132
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.361251 0.445527 0.654178 0.435745 0.0650294 132
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0723323 0.0730154 0.0932974 0.0726202 0.00215661 132
produce:beamevent:BeamEvent 0.000165432 67.2982 7217.01 0.00120266 633.942 132
[art]:TriggerResults:TriggerResultInserter 1.2233e-05 1.61387e-05 9.7548e-05 1.47815e-05 8.36537e-06 132
end_path:out1:RootOutput 2.412e-06 3.35196e-06 1.6934e-05 2.973e-06 1.84967e-06 132
end_path:out1:RootOutput(write) 0.0695967 0.123502 0.347341 0.121634 0.0291461 132
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1416.42 MB
Peak resident set size usage (VmHWM): 490.783 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1416.42 MB
Peak resident set size usage (VmHWM): 490.783 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 132 passed = 132 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 132 132 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 24.362213 Real = 9538.524162
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1416.42 VmHWM = 490.783
%MSG-s ArtException: PostEndJob 22-Nov-2024 11:57:53 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
%MSG-s ArtException: PostEndJob 22-Nov-2024 11:57:53 PST ModuleEndJob
---- HDF5RawDataFile BEGIN
File open failure: root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5 Unable to open file root://dcdndoor.sdcc.bnl.gov:1094//pnfs/sdcc.bnl.gov/data/dune/RSE/hd-protodune/51/4c/np04hd_raw_run028023_0177_dataflow6_datawriter_0_20240716T182855.hdf5 (File accessibility) Unable to open file
---- HDF5RawDataFile END
%MSG
Art has completed and will exit with status 1.