Jobsub ID 105555.157@justin-prod-sched02.dune.hep.ac.uk
| Jobsub ID | 105555.157@justin-prod-sched02.dune.hep.ac.uk | |
| Workflow ID | 4189 | |
| Stage ID | 1 | |
| User name | calcuttj@fnal.gov | |
| HTCondor Group | group_dune | |
| Requested | Processors | 1 |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 80000 (22 hours) | |
| Submitted time | 2024-11-21 03:05:06 | |
| Site | NL_NIKHEF | |
| Entry | VIRGO_NL_NIKHEF_juk | |
| Last heartbeat | 2024-11-21 07:37:15 | |
| From worker node | Hostname | wn-snel-030.farm.nikhef.nl |
| cpuinfo | AMD EPYC 7H12 64-Core Processor | |
| OS release | Scientific Linux release 7.9 (Nitrogen) | |
| Processors | 1 | |
| RSS bytes | 2096103424 (1999 MiB) | |
| Wall seconds limit | 129600 (36 hours) | |
| Inner Apptainer? | True | |
| Job state | jobscript_error | |
| Allocator name | justin-allocator-pro.dune.hep.ac.uk | |
| Started | 2024-11-21 03:13:37 | |
| Input files | hd-protodune:np04hd_raw_run028891_0163_dataflow4_datawriter_0_20240823T194624.hdf5 hd-protodune:np04hd_raw_run028891_0164_dataflow7_datawriter_0_20240823T194750.hdf5 hd-protodune:np04hd_raw_run028891_0107_dataflow7_datawriter_0_20240823T181737.hdf5 hd-protodune:np04hd_raw_run028891_0165_dataflow2_datawriter_0_20240823T194927.hdf5 hd-protodune:np04hd_raw_run028891_0107_dataflow3_datawriter_0_20240823T181737.hdf5 | |
| Jobscript | Exit code | 139 |
| Real time | 0m (0s) | |
| CPU time | 0m (0s = 0%) | |
| Outputting started | ||
| Output files | ||
| Finished | 2024-11-21 07:37:15 | |
| Saved logs | justin-logs:105555.157-justin-prod-sched02.dune.hep.ac.uk.logs.tgz | |
| List job events Wrapper job log | ||
Jobscript log (last 10,000 characters)
6:49 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_JUN2024_ANALYSIS&t0=1724437140.000&t1=1724437320.000&f=csv'
[Thu Nov 21 07:36:49 2024] perform_with_timeout: rc=35, try=0, delay=0, t0=1732171009, dt=0 timeout=1200
[Thu Nov 21 07:39:17 2024] perform_with_timeout: curl_easy_perform() failed: 'SSL connect error'
[Thu Nov 21 07:39:17 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_JUN2024_ANALYSIS&t0=1724437140.000&t1=1724437320.000&f=csv'
[Thu Nov 21 07:39:17 2024] perform_with_timeout: rc=35, try=4, delay=7, t0=1732171009, dt=148 timeout=1200
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 08:04:20 CET run: 28891 subRun: 1 event: 26779 BeamEvent_module.cc:1424
Could not get GeneralTrigger information!!
%MSG
[Thu Nov 21 08:19:30 2024] perform_with_timeout: curl_easy_perform() failed: 'SSL connect error'
[Thu Nov 21 08:19:30 2024] perform_with_timeout: URL='https://ifb-data.fnal.gov:8104/ifbeam/data/data?b=DUNE_CERN_JUN2024_ANALYSIS&t0=1724437140.000&t1=1724437320.000&f=csv'
[Thu Nov 21 08:19:30 2024] perform_with_timeout: rc=35, try=9, delay=197, t0=1732172660, dt=910 timeout=1200
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 08:35:06 CET run: 28891 subRun: 1 event: 26779 BeamEvent_module.cc:1785
Could not get Cerenkov 1 Pressure
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 08:35:49 CET run: 28891 subRun: 1 event: 26779 BeamEvent_module.cc:1828
Could not get XCET1 info
%MSG
%MSG-w BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 08:35:49 CET run: 28891 subRun: 1 event: 26779 BeamEvent_module.cc:1846
Could not get XCET2 info
%MSG
%MSG-i BeamEvent: BeamEvent:beamevent@BeginModule 21-Nov-2024 08:35:49 CET run: 28891 subRun: 1 event: 26779 BeamEvent_module.cc:841
Could not find matching time
%MSG
Timing trigger: 12
Matched: 0
CKovs: 0 0
TOF, P: 0 -1
21-Nov-2024 08:35:50 CET Closed output file "np04hd_raw_run028891_0107_dataflow3_datawriter_0_20240823T181737_beam.root"
21-Nov-2024 08:35:50 CET Closed output file "np04hd_raw_run028891_0107_dataflow3_datawriter_0_20240823T181737_beam.root"
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 0:
#000: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5I.c line 456 in H5Idec_ref(): can't decrement ID ref count
major: Object atom
minor: Unable to decrement reference count
#001: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Iint.c line 1018 in H5I_dec_app_ref(): can't decrement ID ref count
major: Object atom
minor: Unable to decrement reference count
#002: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 251 in H5F__close_cb(): unable to close file
major: File accessibility
minor: Unable to close file
#003: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3983 in H5VL_file_close(): file close failed
major: Virtual Object Layer
minor: Unable to close file
#004: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLcallback.c line 3952 in H5VL__file_close(): file close failed
major: Virtual Object Layer
minor: Unable to close file
#005: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5VLnative_file.c line 838 in H5VL__native_file_close(): can't close file
major: File accessibility
minor: Unable to decrement reference count
#006: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 2349 in H5F__close(): can't close file
major: File accessibility
minor: Unable to close file
#007: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 2522 in H5F_try_close(): problems closing file
major: File accessibility
minor: Unable to close file
#008: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5Fint.c line 1605 in H5F__dest(): unable to close file
major: File accessibility
minor: Unable to close file
#009: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FD.c line 830 in H5FD_close(): close failed
major: Virtual File Layer
minor: Unable to close file
#010: /scratch/workspace/build-single/BUILDTYPE/prof/QUAL/e26/label1/swarm/label2/SLF7/build/hdf5/v1_12_2a/source/hdf5-1.12.2/src/H5FDsec2.c line 456 in H5FD__sec2_close(): unable to close file, errno = 110, error message = 'Connection timed out'
major: Low-level I/O
minor: Unable to close file
HighFive::~Object: reference counter decrease failure
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 0.683959 100.59 7093.38 0.826605 698.934 155
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.7984e-05 2.06564e-05 0.000102592 1.9907e-05 6.81262e-06 155
produce:triggerrawdecoder:PDHDTriggerReader3 0.473484 0.538413 0.673714 0.530544 0.0392912 155
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.0850663 0.0951638 0.188089 0.0861917 0.0149812 155
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0170667 0.0172411 0.017588 0.0172082 0.000111729 155
produce:beamevent:BeamEvent 0.000523261 99.7791 7092.47 0.00878316 698.927 155
[art]:TriggerResults:TriggerResultInserter 1.4357e-05 1.83599e-05 5.9081e-05 1.7693e-05 4.78834e-06 155
end_path:out1:RootOutput 2.926e-06 3.69954e-06 1.7954e-05 3.567e-06 1.19468e-06 155
end_path:out1:RootOutput(write) 0.0813922 0.159842 0.241348 0.160638 0.0314322 155
===================================================================================================================================
===================================================================================================================================
TimeTracker printout (sec) Min Avg Max Median RMS nEvts
===================================================================================================================================
Full event 0.683959 100.59 7093.38 0.826605 698.934 155
-----------------------------------------------------------------------------------------------------------------------------------
source:HDF5RawInput3(read) 1.7984e-05 2.06564e-05 0.000102592 1.9907e-05 6.81262e-06 155
produce:triggerrawdecoder:PDHDTriggerReader3 0.473484 0.538413 0.673714 0.530544 0.0392912 155
produce:ctbrawdecoder:PDHDCTBRawDecoder 0.0850663 0.0951638 0.188089 0.0861917 0.0149812 155
produce:timingrawdecoder:PDHDTimingRawDecoder 0.0170667 0.0172411 0.017588 0.0172082 0.000111729 155
produce:beamevent:BeamEvent 0.000523261 99.7791 7092.47 0.00878316 698.927 155
[art]:TriggerResults:TriggerResultInserter 1.4357e-05 1.83599e-05 5.9081e-05 1.7693e-05 4.78834e-06 155
end_path:out1:RootOutput 2.926e-06 3.69954e-06 1.7954e-05 3.567e-06 1.19468e-06 155
end_path:out1:RootOutput(write) 0.0813922 0.159842 0.241348 0.160638 0.0314322 155
===================================================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1599.48 MB
Peak resident set size usage (VmHWM): 708.71 MB
====================================================================================================
====================================================================================================
MemoryTracker summary (base-10 MB units used)
Peak virtual memory usage (VmPeak) : 1599.48 MB
Peak resident set size usage (VmHWM): 708.71 MB
====================================================================================================
TrigReport ---------- Event summary -------------
TrigReport Events total = 155 passed = 155 failed = 0
TrigReport ---------- Modules in End-path ----------
TrigReport Run Success Error Name
TrigReport 155 155 0 out1
TimeReport ---------- Time summary [sec] -------
TimeReport CPU = 42.464654 Real = 15793.399198
MemReport ---------- Memory summary [base-10 MB] ------
MemReport VmPeak = 1599.48 VmHWM = 708.71